Ion-pair and HILIC chromatography for short and charged peptides
Why a dipeptide at 3.9 minutes on C18 is not a separation, and what to run instead.
GHK-Cu and thymulin are half-measured without a metal number, and the mobile phase is the reason.
Two compounds in this index are metal complexes by design: GHK-Cu, a copper(II) complex of glycyl-histidyl-lysine, and thymulin, whose activity is zinc-dependent. For both, a reverse-phase purity figure describes the peptide and says nothing whatsoever about the metal — and worse, the method actively destroys the thing being measured.
The index reference method uses 0.1 % trifluoroacetic acid, giving a mobile-phase pH near 2. At that pH the histidine imidazole and the peptide amide nitrogens that coordinate copper are protonated, the complex dissociates, and what reaches the detector is apo-GHK. The chromatogram of authentic GHK-Cu is a chromatogram of the free peptide with a copper-shaped absence.
The practical consequence: a GHK-Cu lot containing no copper at all and a GHK-Cu lot fully complexed will produce very similar reverse-phase chromatograms and very similar purity figures. The purity number cannot distinguish the product from its raw material.
GHK-Cu: peptide GHK = 340.38 Da, Cu = 63.55 Da
Stoichiometric 1:1 complex, M = 401.91 Da (as the neutral complex)
predicted Cu content = 63.55 / 401.91 × 100 = 15.81 %w/w
Measured Cu (ICP-MS): 14.9 %w/w
→ 0.94 × stoichiometric. Consistent with near-complete complexation.
Measured Cu: 4.1 %w/w
→ 0.26 × stoichiometric. Roughly a quarter complexed; three quarters
of the material is apo-peptide sold as the complex.
RP-HPLC purity on both samples: indistinguishable.ICP-MS also quantifies the elemental impurities in ICH Q3D classes 1 to 3 — cadmium, lead, arsenic, mercury, cobalt, vanadium, nickel and the platinum-group metals. For peptides made by solid-phase synthesis the relevant risks are palladium and copper from any catalysed step, and nickel and chromium from stainless-steel process equipment. No report in this index carries an elemental-impurity profile.
Cited because they are the documents the acceptance criteria above are taken from. The index applies them as written and states every deviation.
Why a dipeptide at 3.9 minutes on C18 is not a separation, and what to run instead.
Purity is a ratio of areas. Content is a fraction of mass. A 99 % pure vial can contain 78 % peptide, and the difference is the whole ball game.
Acetate, trifluoroacetate, mesylate and the rest — by ion chromatography, with the stoichiometry check that tells you whether the number is plausible.